Protein ZmTUB4
ZmTUB4 is a protein in the TUB family.
Information
TF Name: ZmTUB4
Species: Maize
TF Family: TUB
Gene Name(Synonym): TUBTF4
Uniprot ID: B6SU20
Subgenome: 1

Protein ZmTUB4

ZmTUB4 is a protein in the TUB family.

Overview of domains present in v5 transcripts
PF00646PF01167PF12937
Zm00001eb076160_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d002896DAPseq no logo sequence fimo position
Zm00001d002896DAPseq no logo sequence fimo position
Zm00001d002896ChIPseq no logo sequence fimo position
Zm00001d002896PChIPseq no logo sequence fimo position

Interactions where ZmTUB4 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmTUB4 is the target  
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There are 129 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb076160_T001 from maize genome v5

Amino Acid Sequence
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MSFRSMVRDIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVV
SCASVCTTWRDMCKDIVRSPEHCAKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYRLYLSLSSGVLDENGKFLLAAKRSR
RMAHTEYAIFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQV
NYELNVLGTRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVG
GGSLREGDESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPV
ILQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

MSFRSMVRDIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVV
SCASVCTTWRDMCKDIVRSPEHCAKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYRLYLSLSSGVLDENGKFLLAAKRSR
RMAHTEYAIFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQV
NYELNVLGTRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVG
GGSLREGDESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPV
ILQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

MSFRSMVRDIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVV
SCASVCTTWRDMCKDIVRSPEHCAKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYRLYLSLSSGVLDENGKFLLAAKRSR
RMAHTEYAIFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQV
NYELNVLGTRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVG
GGSLREGDESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPV
ILQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

MSFRSMVRDIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVV
SCASVCTTWRDMCKDIVRSPEHCAKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYRLYLSLSSGVLDENGKFLLAAKRSR
RMAHTEYAIFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQV
NYELNVLGTRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVG
GGSLREGDESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPV
ILQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

MSFRSMVRDIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVV
SCASVCTTWRDMCKDIVRSPEHCAKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYRLYLSLSSGVLDENGKFLLAAKRSR
RMAHTEYAIFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQV
NYELNVLGTRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVG
GGSLREGDESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPV
ILQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

MSFRSMVRDIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVV
SCASVCTTWRDMCKDIVRSPEHCAKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYRLYLSLSSGVLDENGKFLLAAKRSR
RMAHTEYAIFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQV
NYELNVLGTRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVG
GGSLREGDESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPV
ILQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

MSFRSMVRDIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVV
SCASVCTTWRDMCKDIVRSPEHCAKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYRLYLSLSSGVLDENGKFLLAAKRSR
RMAHTEYAIFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQV
NYELNVLGTRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVG
GGSLREGDESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPV
ILQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

MSFRSMVRDIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVV
SCASVCTTWRDMCKDIVRSPEHCAKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYRLYLSLSSGVLDENGKFLLAAKRSR
RMAHTEYAIFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQV
NYELNVLGTRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVG
GGSLREGDESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPV
ILQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00646
PF00646
PF12937
PF01167
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Nucleotide Sequence
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TCCTGTGCTGTGCTGTGGCCTGTGC...

GRMZM2G108228_T01 from maize genome v3


Related TFome: pUT5884

Amino Acid Sequence
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MKMKTAVNRGQTAQRKEGRRFFRTWRVHSSSHLFLHAVLSSPRLARPHPSRHLARRPPLPSIKSDRQLLAAAHSSPLWLF
LAPRAPTHLHALSQLDRPHWQSRRLPYPFLFLQKDWTGSSQSSRSESRRIFFDEASICCSPSACWGLAPYPKMSFRSMVR
DIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVVSCASVCTT
WRDMCKDIVRSPEHCAKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYRLYLSLSSGVLDENGKFLLAAKRSRRMAHTEYA
IFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQVNYELNVLG
TRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVGGGSLREGD
ESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPVILQFGKVG
RDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

Nucleotide Sequence
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CTCAACACTCCACTACGGTACCTCA...

GRMZM2G108228_T02 from maize genome v3

Amino Acid Sequence
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MAHTEYAIFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQVN
YELNVLGTRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVGG
GSLREGDESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPVI
LQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

Nucleotide Sequence
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CCTCCTCTCCCCTCCATAAAATCCG...

GRMZM2G108228_T03 from maize genome v3

Amino Acid Sequence
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MKMKTAVNRGQTAQRKEGRRFFRTWRVHSSSHLFLHAVLSSPRLARPHPSRHLARRPPLPSIKSDRQLLAAAHSSPLWLF
LAPRAPTHLHALSQLDRPHWQSRRLPYPFLFLQKDWTGSSQSSRSESRRIFFDEASICCSPSACWGLAPYPKMSFRSMVR
DIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVVSCASVCTT
WRDMCKDIVRSPEHCAKLTFPVSLKQVMSGFSECL

Nucleotide Sequence
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CTCAACACTCCACTACGGTACCTCA...

Zm00001d002896_T001 from maize genome v4

Amino Acid Sequence
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MSFRSMVRDIRESFGNISRRNFEVRIHHRGKSLGSSGDLQDRPAEVQQSRWASLPPELLCDVMKRLEEDDSSWPDRKDVV
SCASVCTTWRDMCKDIVRSPEHCAKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYRLYLSLSSGVLDENGKFLLAAKRSR
RMAHTEYAIFMDSRNFSRSSTGYIGKLRSNFLGTKFIIYDTQAPYNGGRVCTQERAPSRRLSSRKVSPRVPSGSYPVAQV
NYELNVLGTRGPRRMQCAMHSIPASAVEPGGVVPGQPKELLPRLFDESFRSTATSSFSKYSVADSSMDLGSCPFSEVEVG
GGSLREGDESEKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAPAKTQPQPQASGPPPPPPPSSSSYHDPV
ILQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE

Nucleotide Sequence
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GTGGCGTGTCCACTCATCTTCTCAC...


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